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-rw-r--r--Makefile6
1 files changed, 4 insertions, 2 deletions
diff --git a/Makefile b/Makefile
index e3279d3..d9209ae 100644
--- a/Makefile
+++ b/Makefile
@@ -20,7 +20,8 @@ R_CV_DIR = 10-fold-crossvalidations/R
TENSORFLOW_CV_DIR = 10-fold-crossvalidations/tensorflow
CONFUSION_MATRICES_DIR = 10-fold-crossvalidations/confusion-matrices
-CONFUSION_MATRICES = $(CONFUSION_MATRICES_DIR)/lazar-all.csv $(CONFUSION_MATRICES_DIR)/lazar-high-confidence.csv $(CONFUSION_MATRICES_DIR)/lazar-cdk-all.csv $(CONFUSION_MATRICES_DIR)/lazar-cdk-high-confidence.csv $(CONFUSION_MATRICES_DIR)/R-RF.csv $(CONFUSION_MATRICES_DIR)/R-SVM.csv $(CONFUSION_MATRICES_DIR)/R-DL.csv $(CONFUSION_MATRICES_DIR)/tensorflow-rf-cdk.csv $(CONFUSION_MATRICES_DIR)/tensorflow-lr-cdk.csv $(CONFUSION_MATRICES_DIR)/tensorflow-lr2-cdk.csv $(CONFUSION_MATRICES_DIR)/tensorflow-nn-cdk.csv $(CONFUSION_MATRICES_DIR)/tensorflow-rf-mp2d.csv $(CONFUSION_MATRICES_DIR)/tensorflow-lr-mp2d.csv $(CONFUSION_MATRICES_DIR)/tensorflow-lr2-mp2d.csv $(CONFUSION_MATRICES_DIR)/tensorflow-nn-mp2d.csv
+#CONFUSION_MATRICES = $(CONFUSION_MATRICES_DIR)/lazar-all.csv $(CONFUSION_MATRICES_DIR)/lazar-high-confidence.csv $(CONFUSION_MATRICES_DIR)/lazar-cdk-all.csv $(CONFUSION_MATRICES_DIR)/lazar-cdk-high-confidence.csv $(CONFUSION_MATRICES_DIR)/R-RF.csv $(CONFUSION_MATRICES_DIR)/R-SVM.csv $(CONFUSION_MATRICES_DIR)/R-DL.csv $(CONFUSION_MATRICES_DIR)/tensorflow-rf-cdk.csv $(CONFUSION_MATRICES_DIR)/tensorflow-lr-cdk.csv $(CONFUSION_MATRICES_DIR)/tensorflow-lr2-cdk.csv $(CONFUSION_MATRICES_DIR)/tensorflow-nn-cdk.csv $(CONFUSION_MATRICES_DIR)/tensorflow-rf-mp2d.csv $(CONFUSION_MATRICES_DIR)/tensorflow-lr-mp2d.csv $(CONFUSION_MATRICES_DIR)/tensorflow-lr2-mp2d.csv $(CONFUSION_MATRICES_DIR)/tensorflow-nn-mp2d.csv
+CONFUSION_MATRICES = $(CONFUSION_MATRICES_DIR)/lazar-all.csv $(CONFUSION_MATRICES_DIR)/lazar-high-confidence.csv $(CONFUSION_MATRICES_DIR)/lazar-cdk-all.csv $(CONFUSION_MATRICES_DIR)/lazar-cdk-high-confidence.csv $(CONFUSION_MATRICES_DIR)/tensorflow-rf-cdk.csv $(CONFUSION_MATRICES_DIR)/tensorflow-lr-cdk.csv $(CONFUSION_MATRICES_DIR)/tensorflow-lr2-cdk.csv $(CONFUSION_MATRICES_DIR)/tensorflow-nn-cdk.csv $(CONFUSION_MATRICES_DIR)/tensorflow-rf-mp2d.csv $(CONFUSION_MATRICES_DIR)/tensorflow-lr-mp2d.csv $(CONFUSION_MATRICES_DIR)/tensorflow-lr2-mp2d.csv $(CONFUSION_MATRICES_DIR)/tensorflow-nn-mp2d.csv
CV_SUMMARY = 10-fold-crossvalidations/summary.yaml
PA_SUMMARY = pyrrolizidine-alkaloids/summary.yaml
@@ -33,7 +34,8 @@ PA_LAZAR_DIR = $(PA_DIR)/lazar
PA_R_DIR = $(PA_DIR)/R
PA_TF_DIR = $(PA_DIR)/tensorflow
-PA_PREDICTIONS = $(PA_LAZAR_DIR)/pa-mp2d-predictions.csv $(PA_LAZAR_DIR)/pa-cdk-predictions.csv $(PA_R_DIR)/PA.RF.outcome.csv $(PA_R_DIR)/PA.SVM.outcome.csv $(PA_R_DIR)/PA.DL.outcome.csv $(PA_TF_DIR)/pred.lr.v3-ext-Padel-2D.csv $(PA_TF_DIR)/pred.lr2.v3-ext-Padel-2D.csv $(PA_TF_DIR)/pred.rf.v3-ext-Padel-2D.csv $(PA_TF_DIR)/pred.nn.v3-ext-Padel-2D.csv
+#PA_PREDICTIONS = $(PA_LAZAR_DIR)/pa-mp2d-predictions.csv $(PA_LAZAR_DIR)/pa-cdk-predictions.csv $(PA_R_DIR)/PA.RF.outcome.csv $(PA_R_DIR)/PA.SVM.outcome.csv $(PA_R_DIR)/PA.DL.outcome.csv $(PA_TF_DIR)/pred.lr.v5-ext-Padel-2D.csv $(PA_TF_DIR)/pred.lr2.v5-ext-Padel-2D.csv $(PA_TF_DIR)/pred.rf.v5-ext-Padel-2D.csv $(PA_TF_DIR)/pred.nn.v5-ext-Padel-2D.csv
+PA_PREDICTIONS = $(PA_LAZAR_DIR)/pa-mp2d-predictions.csv $(PA_LAZAR_DIR)/pa-cdk-predictions.csv $(PA_TF_DIR)/pred.lr.v5-ext-Padel-2D.csv $(PA_TF_DIR)/pred.lr2.v5-ext-Padel-2D.csv $(PA_TF_DIR)/pred.rf.v5-ext-Padel-2D.csv $(PA_TF_DIR)/pred.nn.v5-ext-Padel-2D.csv
# manuscript