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require File.join(File.expand_path(File.dirname(__FILE__)),"setup.rb")
class BasicTest < Test::Unit::TestCase
# check response from service
def test_01_get_investigations_200
response = OpenTox::RestClientWrapper.get $toxbank_investigation[:uri], {}, :subjectid => @@subjectid
assert_equal 200, response.code
end
# check if default response header is text/uri-list
def test_02_get_investigations_type
response = OpenTox::RestClientWrapper.get $toxbank_investigation[:uri], {}, { :accept => 'text/uri-list', :subjectid => @@subjectid }
assert_equal "text/uri-list", response.headers[:content_type]
end
# check sparql query call to all investigations
def test_03_get_investigations_query
response = OpenTox::RestClientWrapper.get $toxbank_investigation[:uri], {:query => "SELECT ?s WHERE { ?s ?p ?o } LIMIT 5" }, { :accept => 'application/sparql-results+xml', :subjectid => @@subjectid }
assert_equal 200, response.code
end
end
class BasicTestCRUDInvestigation < Test::Unit::TestCase
# check post to investigation service without file
def test_01_post_investigation_400
assert_raise OpenTox::RestCallError do
response = OpenTox::RestClientWrapper.post $toxbank_investigation[:uri], {}, { :accept => 'text/dummy', :subjectid => @@subjectid }
end
end
# create an investigation by uploading a zip file
def test_02_post_investigation
@@uri = ""
file = File.join File.dirname(__FILE__), "data/toxbank-investigation/valid", "BII-I-1.zip"
#task_uri = `curl -k -X POST #{$toxbank_investigation[:uri]} -H "Content-Type: multipart/form-data" -F "file=@#{file};type=application/zip" -H "subjectid:#{@@subjectid}"`
response = OpenTox::RestClientWrapper.post $toxbank_investigation[:uri], {:file => File.open(file)}, { :subjectid => @@subjectid }
task_uri = response.chomp
task = OpenTox::Task.new task_uri
task.wait
uri = task.resultURI
@@uri = URI(uri)
assert @@uri.host == URI($toxbank_investigation[:uri]).host
# check_rdf
response = `curl -i -k -H subjectid:#{@@subjectid} -H accept:application/rdf+xml #{uri}`.chomp
assert_match /[Term Source Name, OBI, DOID, BTO, NEWT, UO, CHEBI, PATO, TBP, TBC, TBO, TBU, TBK]/, response
assert_match /[Investigation Identifier, BII\-I\-1]/, response
assert_match /[Investigation Title, Growth control of the eukaryote cell\: a systems biology study in yeast]/, response
assert_match /[Investigation Description, Background Cell growth underlies many key cellular and developmental processes]/, response
assert_match /[Owning Organisation URI, TBO\:G176, Public]/, response
assert_match /[Consortium URI, TBC\:G2, Douglas Connect]/, response
assert_match /[Principal Investigator URI, TBU\:U115, Glenn Myatt]/, response
assert_match /[Investigation keywords, TBK\:Blotting, Southwestern;TBK\:Molecular Imaging;DOID\:primary carcinoma of the liver cells]/, response
end
# get investigation/{id} as text/uri-list
def test_03_get_investigation_uri_list
#puts @@uri
#@@uri = "http://toxbank-ch.in-silico.ch/60"
result = OpenTox::RestClientWrapper.get @@uri.to_s, {}, {:accept => "text/uri-list", :subjectid => @@subjectid}
#puts result.to_yaml
assert_equal "text/uri-list", result.headers[:content_type]
end
# get investigation/{id} as application/zip
def test_04_get_investigation_zip
result = OpenTox::RestClientWrapper.get @@uri.to_s, {}, {:accept => "application/zip", :subjectid => @@subjectid}
assert_equal "application/zip", result.headers[:content_type]
end
# get investigation/{id} as text/tab-separated-values
def test_05_get_investigation_tab
result = OpenTox::RestClientWrapper.get @@uri.to_s, {}, {:accept => "text/tab-separated-values", :subjectid => @@subjectid}
assert_equal "text/tab-separated-values;charset=utf-8", result.headers[:content_type]
end
# get investigation/{id} as application/sparql-results+json
def test_06_get_investigation_sparql
result = OpenTox::RestClientWrapper.get @@uri.to_s, {}, {:accept => "application/rdf+xml", :subjectid => @@subjectid}
assert_equal "application/rdf+xml", result.headers[:content_type]
end
# check if uri is in uri-list
def test_98_get_investigation
response = OpenTox::RestClientWrapper.get $toxbank_investigation[:uri], {}, :subjectid => @@subjectid
assert response.index(@@uri.to_s) != nil, "URI: #{@@uri} is not in uri-list"
end
# delete investigation/{id}
def test_99_delete_investigation
result = OpenTox::RestClientWrapper.delete @@uri.to_s, {}, :subjectid => @@subjectid
assert result.match(/^Investigation [\d]+ deleted$/)
assert !OpenTox::Authorization.uri_has_policy(@@uri.to_s, @@subjectid)
end
end
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